NTU Course

Introduction to Bioinformatics

Offered in 113-1
  • Serial Number

    82041

  • Course Number

    Agron5050

  • Course Identifier

    621 U6390

  • No Class

  • 3 Credits
  • Elective

    DEPARTMENT OF AGRONOMY / BIOLOGICAL STATISTICS / TEACHING PROGRAMME OF STEM CELL AND REGENERATIVE BIO-MEDICINE / GRADUATE INSTITUTE OF AGRONOMY, BIOMETRY DIVISION

      Elective
    • DEPARTMENT OF AGRONOMY

    • BIOLOGICAL STATISTICS

    • TEACHING PROGRAMME OF STEM CELL AND REGENERATIVE BIO-MEDICINE

    • GRADUATE INSTITUTE OF AGRONOMY, BIOMETRY DIVISION

  • STEVEN HUNG-HSI WU
  • Fri 6, 7, 8
  • Please contact the department office for more information

  • Type 3

  • 45 Student Quota

    NTU 45

  • No Specialization Program

  • English
  • NTU COOL
  • Core Capabilities and Curriculum Planning
  • Notes
    The course is conducted in English。
  • NTU Enrollment Status

    Enrolled
    0/45
    Other Depts
    0/0
    Remaining
    0
    Registered
    0
  • Course Description
    Bioinformatics is a rapidly evolving field, and it is actively used in multiple areas of research. This interdisciplinary field integrates biology, statistics, and computer science together to analyse and interpret biological data. The course covers the most important and fundamental concepts, methods, and tools used in bioinformatics. Students will be able to use these bioinformatics tools to solve the problems for their own research.

    Modules in this course

    1. Basic bioinformatics skills: basic statistics and programming.
    2. Molecular evolution: Multiple sequence alignment and phylogenetic analysis.
    3. Next generation sequencing (NGS) analysis: Genome assembly, genome annotation, and metagenomics.
    4. Other topics in bioinformatics
    Course selection: This is a Type 3 course, hence there is no permission number.
     

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  • Course Objective
    • Understand that bioinformatics is an interdisciplinary field and communicate with researchers from different backgrounds.
    • Evaluate and identify appropriate bioinformatics software for your own research.
    • Develop problem-solving skills in bioinformatics. Integrate a range of bioinformatics techniques to extract information from biological data.
    • Work collaboratively in groups to solve challenges in the interdisciplinary fields.
  • Course Requirement
    • This course will be taught in English. All materials are available in English only.
    • Cheating and plagiarism in assignments, exams or any other assessments are serious academic misconduct. All instances will be handled according to the university policy.
    • There are no strict prerequisites for this course. However, it is recommended that students have a basic understanding of molecular biology, genetics, and statistics with basic programming in R or any other language.
  • Expected weekly study hours before and/or after class
    The expected study time outside of class per week varies depending on the student's background:
    • For students with relevant background knowledge: approximately 2-5 hours per week.
    • For students without prior knowledge: approximately 4-8 hours per week or more, depending on individual
    Please note that these assume efficient use of time and do not account for potential challenges such as troubleshooting basic syntax errors, tackling advanced problems without mastering fundamentals, or spending excessive time on unnecessary details. Students should be aware of these obstacles and allocate extra time if needed.
  • Office Hour
  • Designated Reading
    TBD
  • References
    TBD
  • Grading
  • Adjustment methods for students
  • Make-up Class Information
  • Course Schedule
    Sep-06Week 1Overview of bioinformatics
    Sep-13Week 2M1 - Basic bioinformatics skills: R and Command line part 1
    Sep-20Week 3M1 - Basic bioinformatics skills: Command line part 2
    Sep-27Week 4M1- Basic bioinformatics skills: Regular expression
    Oct-04Week 5M2 - Molecular evolution: Sequence alignment
    Oct-11Week 6M2 - Molecular evolution: Sequence alignment
    Oct-18Week 7M2 - Molecular evolution: Phylogenetic analysis
    Oct-25Week 8M2 - Molecular evolution: Phylogenetic analysis
    Nov-01Week 9M3 - Next generation sequencing (NGS) analysis: Modern sequencing methods
    Nov-08Week 10M3 - NGS analysis: Genome assembly
    Nov-15Week 11 Holiday
    Nov-22Week 12 Holiday
    Nov-29Week 13M3 - NGS analysis: Genome annotation
    Dec-06Week 14Other topics in bioinformatics - Part 1
    Dec-13Week 15Other topics in bioinformatics - Part 2
    Dec-20Week 16Group project - Presentation