Serial Number
82041
Course Number
Agron5050
Course Identifier
621 U6390
No Class
- 3 Credits
Elective
DEPARTMENT OF AGRONOMY / BIOLOGICAL STATISTICS / TEACHING PROGRAMME OF STEM CELL AND REGENERATIVE BIO-MEDICINE / GRADUATE INSTITUTE OF AGRONOMY, BIOMETRY DIVISION
DEPARTMENT OF AGRONOMY
BIOLOGICAL STATISTICS
TEACHING PROGRAMME OF STEM CELL AND REGENERATIVE BIO-MEDICINE
GRADUATE INSTITUTE OF AGRONOMY, BIOMETRY DIVISION
Elective- STEVEN HUNG-HSI WU
- View Courses Offered by Instructor
College of Bioresources & Agriculture DEPARTMENT OF AGRONOMY
stevenwu@ntu.edu.tw
- Fri 6, 7, 8
Please contact the department office for more information
Type 3
45 Student Quota
NTU 45
No Specialization Program
- English
- NTU COOL
- Core Capabilities and Curriculum Planning
- NotesThe course is conducted in English。
NTU Enrollment Status
Enrolled0/45Other Depts0/0Remaining0Registered0- Course DescriptionBioinformatics is a rapidly evolving field, and it is actively used in multiple areas of research. This interdisciplinary field integrates biology, statistics, and computer science together to analyse and interpret biological data. The course covers the most important and fundamental concepts, methods, and tools used in bioinformatics. Students will be able to use these bioinformatics tools to solve the problems for their own research.
Modules in this course
- Basic bioinformatics skills: basic statistics and programming.
- Molecular evolution: Multiple sequence alignment and phylogenetic analysis.
- Next generation sequencing (NGS) analysis: Genome assembly, genome annotation, and metagenomics.
- Other topics in bioinformatics
DirectPoll
- Course Objective
- Understand that bioinformatics is an interdisciplinary field and communicate with researchers from different backgrounds.
- Evaluate and identify appropriate bioinformatics software for your own research.
- Develop problem-solving skills in bioinformatics. Integrate a range of bioinformatics techniques to extract information from biological data.
- Work collaboratively in groups to solve challenges in the interdisciplinary fields.
- Course Requirement
- This course will be taught in English. All materials are available in English only.
- Cheating and plagiarism in assignments, exams or any other assessments are serious academic misconduct. All instances will be handled according to the university policy.
- There are no strict prerequisites for this course. However, it is recommended that students have a basic understanding of molecular biology, genetics, and statistics with basic programming in R or any other language.
- Expected weekly study hours before and/or after classThe expected study time outside of class per week varies depending on the student's background:
- For students with relevant background knowledge: approximately 2-5 hours per week.
- For students without prior knowledge: approximately 4-8 hours per week or more, depending on individual
- Office Hour
- Designated ReadingTBD
- ReferencesTBD
- Grading
- Adjustment methods for students
- Make-up Class Information
- Course Schedule
Sep-06Week 1 Sep-06 Overview of bioinformatics Sep-13Week 2 Sep-13 M1 - Basic bioinformatics skills: R and Command line part 1 Sep-20Week 3 Sep-20 M1 - Basic bioinformatics skills: Command line part 2 Sep-27Week 4 Sep-27 M1- Basic bioinformatics skills: Regular expression Oct-04Week 5 Oct-04 M2 - Molecular evolution: Sequence alignment Oct-11Week 6 Oct-11 M2 - Molecular evolution: Sequence alignment Oct-18Week 7 Oct-18 M2 - Molecular evolution: Phylogenetic analysis Oct-25Week 8 Oct-25 M2 - Molecular evolution: Phylogenetic analysis Nov-01Week 9 Nov-01 M3 - Next generation sequencing (NGS) analysis: Modern sequencing methods Nov-08Week 10 Nov-08 M3 - NGS analysis: Genome assembly Nov-15Week 11 Nov-15 Holiday Nov-22Week 12 Nov-22 Holiday Nov-29Week 13 Nov-29 M3 - NGS analysis: Genome annotation Dec-06Week 14 Dec-06 Other topics in bioinformatics - Part 1 Dec-13Week 15 Dec-13 Other topics in bioinformatics - Part 2 Dec-20Week 16 Dec-20 Group project - Presentation