NTU Course

Introduction to Bioinformatics

Offered in 114-1
  • Serial Number

    32429

  • Course Number

    Agron5050

  • Course Identifier

    621 U6390

  • No Class

  • 3 Credits
  • Elective

    DEPARTMENT OF AGRONOMY / BIOLOGICAL STATISTICS / TEACHING PROGRAMME OF STEM CELL AND REGENERATIVE BIO-MEDICINE / GRADUATE INSTITUTE OF AGRONOMY, BIOMETRY DIVISION

      Elective
    • DEPARTMENT OF AGRONOMY

    • BIOLOGICAL STATISTICS

    • TEACHING PROGRAMME OF STEM CELL AND REGENERATIVE BIO-MEDICINE

    • GRADUATE INSTITUTE OF AGRONOMY, BIOMETRY DIVISION

  • STEVEN HUNG-HSI WU
  • Fri 6, 7, 8
  • Please contact the department office for more information

  • Type 3

  • 45 Student Quota

    NTU 45

  • No Specialization Program

  • English
  • NTU COOL
  • Core Capabilities and Curriculum Planning
  • Notes

    The course is conducted in English。

  • NTU Enrollment Status

    Enrolled
    0/45
    Other Depts
    0/0
    Remaining
    0
    Registered
    0
  • Course Description
    Bioinformatics is a rapidly evolving interdisciplinary field that combines biology, statistics, and computer science to analyze and interpret complex biological data. This course provides essential concepts, methods, and computational tools widely used in modern bioinformatics research. Through hands-on workshops with bioinformatics software and techniques, the course develops practical skills to address real-world research challenges and apply these tools effectively to scientific research.

    Course Modules

    1. Foundational Skills: Statistics, R programming, and command-line tools
    2. Molecular Evolution: Sequence alignment and phylogenetic analysis
    3. Next Generation Sequencing (NGS): Genome assembly, annotation, and metagenomics
    4. Special topics in Bioinformatics
    Location: Room 506 at The Center for Intelligent Agriculture Education and Research.
    Course selection: This is a Type 3 course. Here are the instructions to sign up for the waiting list (willingness)
     

    Poll everywhere

  • Course Objective
    • Understand bioinformatics as an interdisciplinary field and effectively communicate with researchers from different backgrounds
    • Evaluate and identify appropriate bioinformatics tools and software for research purposes
    • Develop analytical problem-solving skills in bioinformatics and integrate multiple bioinformatics techniques to extract information from biological data
    • Work collaboratively in an interdisciplinary team to solve challenges in biological research
  • Course Requirement
    • This course is conducted entirely in English, and all materials are provided in English only
    • No formal prerequisites are required for this course, but recommend basic knowledge of molecular biology, genetics, and statistics, along with introductory programming experience in R or similar languages
    • Academic integrity is strictly enforced: Any form of cheating or plagiarism in assignments, exams, or assessments constitutes serious academic misconduct and will be handled according to university policy
  • Expected weekly study hours before and/or after class
    The expected study time outside of class per week varies depending on the student's background: The expected study time outside of class varies based on prior experience:
    • With relevant background: approximately 3-6 hours per week
    • Without prior experience: approximately 4-8 hours per week or more
    These estimates assume efficient use of study time on course materials. Additional time may be required for tasks such as debugging basic syntax errors, troubleshooting software issues, or inefficient study approaches like tackling advanced problems without mastering fundamentals or spending excessive time on unnecessary details - be aware of these obstacles and allocate extra time if needed.
  • Office Hour
    *This office hour requires an appointment
  • Designated Reading
    TBD
  • References
    TBD
  • Grading
    15%

    Quizzes

    40%

    Assginments

    15%

    Group project - Proposal

    30%

    Group project - Presentation

  • Adjustment methods for students
    Adjustment MethodDescription
    A2

    以錄影輔助

    Assisted by video

  • Make-up Class Information
  • Course Schedule
    Sep-05Week 1Overview of bioinformatics
    Sep-12Week 2M1 - Basic bioinformatics skills: Command line
    Sep-19Week 3M1- Basic bioinformatics skills: Regular expression
    Sep-26Week 4 Holiday
    Oct-03Week 5M2 - Molecular evolution: Sequence alignment
    Oct-10Week 6 Holiday
    Oct-17Week 7M2 - Molecular evolution: Sequence alignment
    Oct-24Week 8 Holiday
    Oct-31Week 9M2 - Molecular evolution: Phylogenetic analysis
    Nov-07Week 10M2 - Molecular evolution: Phylogenetic analysis
    Nov-14Week 11M3 - Next generation sequencing (NGS) analysis: Modern sequencing methods
    Nov-21Week 12 Holiday
    Nov-28Week 13M3 - NGS analysis: Genome assembly
    Dec-05Week 14M3 - NGS analysis: Genome annotation
    Dec-12Week 15Other topic - Bioinformatics in Industry
    Dec-19Week 16Group project - Presentation