Serial Number
32429
Course Number
Agron5050
Course Identifier
621 U6390
No Class
- 3 Credits
Elective
DEPARTMENT OF AGRONOMY / BIOLOGICAL STATISTICS / TEACHING PROGRAMME OF STEM CELL AND REGENERATIVE BIO-MEDICINE / GRADUATE INSTITUTE OF AGRONOMY, BIOMETRY DIVISION
DEPARTMENT OF AGRONOMY
BIOLOGICAL STATISTICS
TEACHING PROGRAMME OF STEM CELL AND REGENERATIVE BIO-MEDICINE
GRADUATE INSTITUTE OF AGRONOMY, BIOMETRY DIVISION
Elective- STEVEN HUNG-HSI WU
- View Courses Offered by Instructor
College of Bioresources & Agriculture DEPARTMENT OF AGRONOMY
stevenwu@ntu.edu.tw
- Fri 6, 7, 8
Please contact the department office for more information
Type 3
45 Student Quota
NTU 45
No Specialization Program
- English
- NTU COOL
- Core Capabilities and Curriculum Planning
- Notes
The course is conducted in English。
NTU Enrollment Status
Enrolled0/45Other Depts0/0Remaining0Registered0- Course DescriptionBioinformatics is a rapidly evolving interdisciplinary field that combines biology, statistics, and computer science to analyze and interpret complex biological data. This course provides essential concepts, methods, and computational tools widely used in modern bioinformatics research. Through hands-on workshops with bioinformatics software and techniques, the course develops practical skills to address real-world research challenges and apply these tools effectively to scientific research.
Course Modules
- Foundational Skills: Statistics, R programming, and command-line tools
- Molecular Evolution: Sequence alignment and phylogenetic analysis
- Next Generation Sequencing (NGS): Genome assembly, annotation, and metagenomics
- Special topics in Bioinformatics
Location: Room 506 at The Center for Intelligent Agriculture Education and Research.Course selection: This is a Type 3 course. Here are the instructions to sign up for the waiting list (willingness)Poll everywhere
- Course Objective
- Understand bioinformatics as an interdisciplinary field and effectively communicate with researchers from different backgrounds
- Evaluate and identify appropriate bioinformatics tools and software for research purposes
- Develop analytical problem-solving skills in bioinformatics and integrate multiple bioinformatics techniques to extract information from biological data
- Work collaboratively in an interdisciplinary team to solve challenges in biological research
- Course Requirement
- This course is conducted entirely in English, and all materials are provided in English only
- No formal prerequisites are required for this course, but recommend basic knowledge of molecular biology, genetics, and statistics, along with introductory programming experience in R or similar languages
- Academic integrity is strictly enforced: Any form of cheating or plagiarism in assignments, exams, or assessments constitutes serious academic misconduct and will be handled according to university policy
- Expected weekly study hours before and/or after classThe expected study time outside of class per week varies depending on the student's background: The expected study time outside of class varies based on prior experience:
- With relevant background: approximately 3-6 hours per week
- Without prior experience: approximately 4-8 hours per week or more
- Office Hour
*This office hour requires an appointment - Designated ReadingTBD
- ReferencesTBD
- Grading
15% Quizzes
40% Assginments
15% Group project - Proposal
30% Group project - Presentation
- Adjustment methods for students
Adjustment Method Description A2 以錄影輔助
Assisted by video
- Make-up Class Information
- Course Schedule
Sep-05Week 1 Sep-05 Overview of bioinformatics Sep-12Week 2 Sep-12 M1 - Basic bioinformatics skills: Command line Sep-19Week 3 Sep-19 M1- Basic bioinformatics skills: Regular expression Sep-26Week 4 Sep-26 Holiday Oct-03Week 5 Oct-03 M2 - Molecular evolution: Sequence alignment Oct-10Week 6 Oct-10 Holiday Oct-17Week 7 Oct-17 M2 - Molecular evolution: Sequence alignment Oct-24Week 8 Oct-24 Holiday Oct-31Week 9 Oct-31 M2 - Molecular evolution: Phylogenetic analysis Nov-07Week 10 Nov-07 M2 - Molecular evolution: Phylogenetic analysis Nov-14Week 11 Nov-14 M3 - Next generation sequencing (NGS) analysis: Modern sequencing methods Nov-21Week 12 Nov-21 Holiday Nov-28Week 13 Nov-28 M3 - NGS analysis: Genome assembly Dec-05Week 14 Dec-05 M3 - NGS analysis: Genome annotation Dec-12Week 15 Dec-12 Other topic - Bioinformatics in Industry Dec-19Week 16 Dec-19 Group project - Presentation